CATH Domain: 1a2xB00 XML data for domain: 1a2xB00

Molscript image for 1a2xB00
1a2xB00
PDB coordinates for domain 1a2xB00

PDB 1a2x, Chain B, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.20 Up-down Bundle
1.20.5 Single alpha-helices involved in coiled-coils or other helix-helix interfaces
1.20.5.420 Immunoglobulin FC, subunit C Gene3D
1.20.5.420.10
1.20.5.420.10.1
1.20.5.420.10.1.1
1.20.5.420.10.1.1.1
1.20.5.420.10.1.1.1.1

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Segment boundaries for domain 1a2xB00

Chopping figure for domain 1a2xB00
DomainStart PDB ResidueStop PDB Residue
1a2xB00 3 33

Structural Neighbourhood (71 entries)

There are 71 matching structural neighberhood comparisons for CATH ID 1.20.5.420.10.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 71 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1omiA02 90.52 Listeria monocytogenesListeriolysin regulatory protein 1.20.5.460 27 11 83 0.84 1.00
1vf5C03 90.25 Mastigocladus laminosusApocytochrome f 1.20.5.700 32 9 84 1.26 1.49
1jekA00 88.99 Visna/maedi virus EV1 KV1772Envelope glycoprotein gp160 1.20.5.440 40 19 77 0.81 1.05
1fdoA05 88.51 Methane metabolismMetabolic pathwaysGlyoxylate and dicarboxylate metabolismFormate dehydrogenase HFormate dehydrogenase, alpha subunit [EC:1.2.1.2] 1.20.5.460 27 7 87 1.54 1.77
2qjyC01 88.30 Oxidative phosphorylationMetabolic pathwaysRhodobacter sphaeroidesUbiquinol-cytochrome c reductase iron-sulfur subunitUbiquinol-cytochrome c reductase iron-sulfur subunit [EC:1.10.2.2] 1.20.5.510 33 3 90 1.73 1.90
1s3jB01 87.09 Bacillus subtilisUncharacterized HTH-type transcriptional regulator yusO 1.20.5.420 30 6 80 1.33 1.65
1ow6A01 86.91 Focal adhesion kinase 1Focal adhesionCytoskeletonIntegrin-mediated signaling pathwayHomo sapiens 1.20.5.540 30 10 80 2.63 3.26
1t6aA01 86.57 Geobacillus stearothermophilusRbstp2229 protein 1.20.5.850 43 12 67 0.70 1.04
1h8bB00 86.56 TitinOryctolagus cuniculus 1.20.5.510 23 13 64 0.47 0.73
1r8eA03 86.43 Multidrug-efflux transporter 1 regulatorBacillus subtilis 1.20.5.490 44 12 70 0.69 0.98
2o1kA00 86.19 Simian rotavirus A/SA11-bothNon-structural glycoprotein 4 1.20.5.430 42 3 66 1.16 1.74
2p10B02 85.65 Mesorhizobium lotiMll9387 protein 1.20.5.460 26 7 83 1.83 2.18
3effK02 85.52 Streptomyces lividansVoltage-gated potassium channel 1.20.5.440 45 9 68 1.33 1.93
1hj0A00 85.18 Bos taurusThymosin beta-10 1.20.5.520 41 9 75 1.86 2.46
1s5lX00 84.17 Photosystem II reaction center X proteinThermosynechococcus elongatus BP-1 1.20.5.510 40 9 72 2.43 3.35
1kv4A00 84.13 Moricin-1Bombyx mori 1.20.5.750 42 9 73 2.05 2.78
3c8vA04 83.67 Desulfovibrio desulfuricans subsp. desulfuricans str. G20Putative uncharacterized protein 1.20.5.510 19 5 61 0.69 1.13
1gmjD00 83.46 Negative regulation of hydrolase activityProtein homodimerization activityATPase inhibitor activityBos taurusCalmodulin binding 1.20.5.500 56 19 55 0.63 1.14
1kmiZ01 83.33 Bacterial chemotaxisChemotaxis protein cheZProtein bindingChemotaxis protein CheZEscherichia coli K-12 1.20.5.590 30 3 61 0.54 0.88
2o01J01 83.32 Photosystem I reaction center subunit IXSpinacia oleracea 1.20.5.510 25 12 80 2.83 3.51
1k04A01 83.15 Focal adhesion kinase 1Focal adhesionIntegrin-mediated signaling pathwayCytoskeletonHomo sapiens 1.20.5.540 38 9 65 2.36 3.59
1u57A00 82.85 Human immunodeficiency virus type 1 lw12.3 isolateGag polyprotein 1.20.5.760 48 6 64 1.55 2.40
2k1aA00 82.78 Integrin alpha 2BIdentical protein bindingPathways in cancerHematopoietic cell lineageDilated cardiomyopathy 1.20.5.930 42 3 73 3.15 4.27
2zjsE00 82.50 Protein exportBacterial secretion systemThermus thermophilus HB8Preprotein translocase subunit secEPreprotein translocase subunit SecE 1.20.5.1030 46 9 67 1.31 1.94
1ik7A00 82.46 Regulation of proteolysisProtein domain specific bindingHemocyte proliferationPlasma membraneZygotic specification of dorsal/ventral axis 1.20.5.530 52 3 59 1.24 2.08
1jb0J00 82.27 PhotosynthesisPhotosystem I subunit IXPhotosystem I reaction center subunit IXThermosynechococcus elongatus BP-1Metabolic pathways 1.20.5.510 41 6 75 3.69 4.88
1ozhA03 82.21 Acetolactate synthase, catabolicKlebsiella pneumoniae 1.20.5.740 24 0 61 1.63 2.66
2v7qJ00 82.19 Protein homodimerization activityNegative regulation of hydrolase activityATPase inhibitor activityBos taurusCalmodulin binding 1.20.5.500 43 16 67 1.51 2.24
1dipB01 82.15 Sus scrofaTSC22 domain family protein 3 1.20.5.490 45 6 68 1.52 2.21
2k9yA00 81.83 ApoptosisIntegral to plasma membraneEphrin type-A receptor 2Homo sapiensEph receptor A2 [EC:2.7.10.1] 1.20.5.510 41 16 75 2.99 3.95
1ifpA00 81.57 Pseudomonas phage Pf3Capsid protein G8P 1.20.5.440 44 16 70 2.76 3.92
1go9A00 81.22 1.20.5.480 39 9 76 2.36 3.07
1vl2B03 80.97 Thermotoga maritimaArginine and proline metabolismArgininosuccinate synthase [EC:6.3.4.5]Alanine, aspartate and glutamate metabolismArgininosuccinate synthase 1.20.5.470 30 6 74 2.30 3.10
1xrdA01 80.88 Light-harvesting complex 1 alpha chainRhodospirillum rubrumLight-harvesting protein B-870 alpha chain 1.20.5.890 43 6 72 2.74 3.80
1kqfB03 80.86 Two-component systemMetabolic pathwaysGlyoxylate and dicarboxylate metabolismMethane metabolismFormate dehydrogenase activity 1.20.5.480 44 9 70 3.17 4.50
2b9bA04 80.69 Simian virus 5 (strain W3)Fusion glycoprotein F0 1.20.5.1070 62 25 50 0.62 1.24
1ybkA00 80.56 TetrabrachionStaphylothermus marinus 1.20.5.1060 52 12 55 1.60 2.87
1vl2A03 80.35 Thermotoga maritimaArginine and proline metabolismArgininosuccinate synthase [EC:6.3.4.5]Alanine, aspartate and glutamate metabolismArgininosuccinate synthase 1.20.5.470 32 6 78 3.84 4.92
1l2pA00 80.13 Oxidative phosphorylationMetabolic pathwaysATP synthesis coupled proton transportAnchored to membraneF-type H+-transporting ATPase subunit b [EC:3.6.3.14] 1.20.5.620 61 25 47 0.56 1.18
1e5wA04 79.92 Leukocyte migrationReceptor bindingCytoskeletonMembrane to membrane dockingNucleolus 1.20.5.450 55 9 56 1.71 3.03
2h8pC00 78.94 1.10.287.70 57 22 54 1.77 3.25
1rh5B00 78.19 Protein transport protein SEC61 subunit gamma and related proteinsProtein exportMethanocaldococcus jannaschiiPreprotein translocase subunit secE 1.20.5.820 56 9 55 1.67 3.02
2w83C00 78.15 Homo sapiensIntegral to membraneC-Jun-amino-terminal kinase-interacting protein 4SpermatogenesisPositive regulation of cell migration 1.20.5.1000 67 6 46 0.96 2.07
2hr3A01 78.04 Probable transcriptional regulatorPseudomonas aeruginosa 1.20.5.420 30 13 54 1.65 3.01
3bz1H01 77.99 PhotosynthesisThermosynechococcus elongatus BP-1Photosystem II PsbH proteinPhotosystem II reaction center protein HMetabolic pathways 1.20.5.880 51 16 58 2.43 4.13
2qsiA02 77.71 Putative hydrogenase expression/formation protein hupGHydrogenase-1 operon protein HyaERhodopseudomonas palustris 1.20.5.510 27 3 54 0.84 1.53
2e5yA02 77.48 ATP synthase epsilon chainBacillus sp. PS3 1.20.5.440 45 9 53 1.83 3.43
1mqsB00 77.45 Vesicle fusionSyntaxin 5SNAP receptor activityER to Golgi vesicle-mediated transportRetrograde vesicle-mediated transport, Golgi to ER 1.20.5.460 26 0 48 0.46 0.95
1qexA01 76.69 Enterobacteria phage T4Baseplate structural protein Gp9 1.20.5.960 35 3 54 2.08 3.83
1d66B02 76.51 Regulatory protein GAL4NucleusSequence-specific DNA binding transcription factor activityTranscription activator activityPositive regulation of transcription by galactose 1.20.5.640 15 13 48 0.55 1.14
1pl5A00 75.54 Chromatin silencing complexLoss of chromatin silencing involved in replicative cell agingChromatin silencingDouble-strand break repair via nonhomologous end joiningDouble-stranded DNA binding 1.20.5.730 75 16 41 1.02 2.47
2qiwA02 75.07 Corynebacterium glutamicumPEP phosphonomutase and related enzymes 1.20.5.510 18 11 54 1.90 3.46
1mkmA02 74.87 Thermotoga maritimaTranscriptional regulator, IclR family 1.20.5.640 14 7 45 0.45 1.00
2dw3A01 74.44 Intrinsic membrane protein pufXRhodobacter sphaeroides 2.4.1 1.20.5.920 55 6 56 2.76 4.90
2aefB02 72.75 Methanothermobacter thermautotrophicus str. Delta HCalcium-gated potassium channel mthK 1.20.5.870 28 3 41 0.59 1.41
2zvoB00 72.72 Mus musculusNF-kappa-B essential modulatorActivation of NF-kappaB-inducing kinase activityB cell homeostasis 1.20.5.990 88 12 35 0.64 1.82
2otkE00 72.54 1.20.5.420 43 6 46 1.90 4.08
2jo1A00 72.49 Muscle contractionIntegral to plasma membraneFXYD domain-containing ion transport regulator 1PhospholemmanHomo sapiens 1.20.5.780 72 3 43 1.52 3.53
1m8oB00 71.22 Positive regulation of endothelial cell migrationPlatelet-derived growth factor receptor bindingPositive regulation of endothelial cell proliferationActivation of protein kinase activityRegulation of bone resorption 1.20.5.630 47 9 57 2.47 4.30
2v4hB00 71.11 Mus musculusNF-kappa-B essential modulatorActivation of NF-kappaB-inducing kinase activityB cell homeostasis 1.20.5.990 91 12 34 0.71 2.08
1d7mA00 69.88 Cortexillin-1Response to bacteriumProtein homodimerization activityActin filament bundle assemblyActin filament network formation 1.20.5.1050 101 9 30 0.77 2.51
1onvB00 68.98 CTD phosphatase activityProtein dephosphorylationHomo sapiensRNA polymerase II subunit A C-terminal domain phosphataseDNA-directed RNA polymerase activity 1.20.5.670 21 14 51 1.43 2.77
2gm6A01 68.85 Ralstonia eutropha JMP134Cysteine dioxygenase type I 1.20.5.440 38 9 42 1.37 3.25
2i0mA01 68.47 Phosphate transport system proteinPhosphate transport system protein phoUStreptococcus pneumoniae 1.20.58.220 106 9 29 0.78 2.67
1lj2A00 68.33 Simian rotavirus A/SA11-bothNon-structural protein 3Protein binding 1.20.5.970 106 0 29 1.25 4.27
2iubF03 65.51 Thermotoga maritimaMagnesium transport protein corAMetal ion transporter, MIT family 1.20.58.340 73 3 28 1.00 3.48
2jk1A00 63.48 Hydrogenase transcriptional regulatory protein hupR1Rhodobacter capsulatus 3.40.50.2300 138 6 22 1.06 4.72
2o01N01 63.15 Phaseolus vulgarisPhotosystem I-N subunit 1.20.5.740 22 0 70 3.47 4.89
2prrA01 62.39 Ralstonia eutropha JMP134Alkylhydroperoxidase AhpD core:Uncharacterised peroxidase-related 1.20.5.810 52 3 30 1.13 3.67
2iubA02 61.81 Thermotoga maritimaMagnesium transport protein corAMetal ion transporter, MIT family 1.20.58.340 118 6 20 0.64 3.15
1ei7A00 60.54 Coat proteinTobacco mosaic virus (vulgare) 1.20.120.70 158 9 19 0.92 4.69
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Displaying entries 1 to 71 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1a2xB00
EEKRNRAITARRQHLKSVMLQIAATELEKEE
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1a2xB00
GDEEKRNRAITARRQHLKSVMLQIAATELEKEEGRREAEKQNYLAEH
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:17

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:17

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:39

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"