CATH Domain: 1a1hA01 XML data for domain: 1a1hA01

Molscript image for 1a1hA01
1a1hA01
PDB coordinates for domain 1a1hA01

PDB 1a1h, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.160 Double Stranded RNA Binding Domain
3.30.160.60 Classic Zinc Finger Gene3D
3.30.160.60.2
3.30.160.60.2.1
3.30.160.60.2.1.1
3.30.160.60.2.1.1.1
3.30.160.60.2.1.1.1.1

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Segment boundaries for domain 1a1hA01

Chopping figure for domain 1a1hA01
DomainStart PDB ResidueStop PDB Residue
1a1hA01 103 132
1a1hA02 133 159
1a1hA03 160 186

Structural Neighbourhood (29 entries)

There are 29 matching structural neighberhood comparisons for CATH ID 3.30.160.60.2.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 29 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1tf6A04 94.01 Xenopus laevisTranscription factor IIIA 3.30.160.60 30 33 100 0.95 0.95
1tf6A02 92.81 Xenopus laevisTranscription factor IIIA 3.30.160.60 29 37 93 0.86 0.92
1ubdC02 92.71 Zinc ion bindingTranscription coactivator activityTranscriptional repressor protein YY1Transcription factor YYSequence-specific DNA binding transcription factor activity 3.30.160.60 27 40 90 0.84 0.93
1meyC03 92.66 3.30.160.60 29 44 86 0.89 1.03
1x5wA01 92.38 Homo sapiensZinc finger protein 64 homolog, isoforms 1 and 2 3.30.160.60 28 32 90 1.17 1.30
1ubdC04 91.99 Zinc ion bindingTranscription coactivator activityTranscriptional repressor protein YY1Transcription factor YYSequence-specific DNA binding transcription factor activity 3.30.160.60 29 44 93 0.96 1.03
1tf6D01 91.99 Xenopus laevisTranscription factor IIIA 3.30.160.60 33 26 87 0.85 0.97
1ubdC01 91.43 Zinc ion bindingTranscription coactivator activityTranscriptional repressor protein YY1Transcription factor YYSequence-specific DNA binding transcription factor activity 3.30.160.60 28 25 93 1.22 1.31
1tf3A01 90.82 Xenopus laevisTranscription factor IIIA 3.30.160.60 30 26 96 1.57 1.62
2drpA02 88.96 Brain morphogenesisChromatin bindingDorsal appendage formationDrosophila melanogasterPeripheral nervous system development 3.30.160.60 29 31 86 1.55 1.79
2gliA01 88.90 Positive regulation of transcription from RNA polymerase II promoterPositive regulation of DNA replicationEpidermal cell differentiationCytosolRegulation of smoothened signaling pathway 3.30.160.60 33 23 87 1.66 1.89
2adrA01 88.88 NucleusRegulation of carbohydrate metabolic processPeroxisome organizationNegative regulation of transcription from RNA polymerase II promoter by glucoseRegulatory protein ADR1 3.30.160.60 29 41 93 2.27 2.43
1bboA02 88.47 DNA bindingZinc finger protein 40NucleusHomo sapiensHuman immunodeficiency virus type I enhancer-binding protein 3.30.160.60 31 33 90 2.56 2.83
1un6D02 88.38 Xenopus laevisTranscription factor IIIA 3.30.160.60 31 16 96 1.67 1.73
2gliA04 88.29 Positive regulation of transcription from RNA polymerase II promoterPositive regulation of DNA replicationEpidermal cell differentiationCytosolRegulation of smoothened signaling pathway 3.30.160.60 31 30 96 1.87 1.93
2drpA01 88.03 Brain morphogenesisDorsal appendage formationChromatin bindingDrosophila melanogasterPeripheral nervous system development 3.30.160.60 34 26 79 1.46 1.84
1tf6A03 87.09 Xenopus laevisTranscription factor IIIA 3.30.160.60 34 20 88 1.97 2.23
1rmdA02 86.99 Endonuclease activityDeathZinc ion bindingProtein homodimerization activityNucleus 3.30.160.60 30 20 96 3.06 3.17
1kyqA02 83.59 Identical protein bindingPrecorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:1.3.1.76 4.99.1.4]Siroheme biosynthetic processMetabolic pathwaysPrecorrin-2 dehydrogenase activity 3.30.160.110 37 6 75 1.46 1.93
2r1fA03 82.79 Escherichia coli K-12UPF0755 protein yceG 3.30.160.60 39 6 76 2.77 3.60
1pjqA02 82.44 Porphyrin and chlorophyll metabolismSalmonella enterica subsp. enterica serovar TyphimuriumSiroheme synthaseUroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]Metabolic pathways 3.30.160.110 35 6 80 1.89 2.36
1ncsA00 79.52 Regulation of transcription involved in G1 phase of mitotic cell cycleNucleusProtein bindingTranscriptional factor SWI5Cytoplasm 3.30.160.60 47 20 63 2.20 3.45
1llmD02 78.41 Early growth response protein 1Prion diseasesPositive regulation of RNA polymerase II transcriptional preinitiation complex assemblyResponse to insulin stimulusNegative regulation of transcription from RNA polymerase II promoter 3.30.160.60 55 33 49 1.61 3.28
3bidA01 78.37 Neisseria meningitidis serogroup BUPF0339 protein NMB1088 3.30.160.160 46 3 65 1.79 2.74
1bbgA00 77.96 Pollen allergen Amb t 5Ambrosia trifida 3.30.160.80 40 6 62 1.89 3.02
1yuiA00 77.09 Drosophila melanogasterPositive regulation of transcription, DNA-dependentTranscription factor GAGACentromeric heterochromatinProtein heterodimerization activity 3.30.160.60 54 33 51 2.05 3.95
3l4jA02 74.91 Reciprocal meiotic recombinationDNA topoisomerase 2Regulation of mitotic recombinationDNA topoisomerase II [EC:5.99.1.3]DNA strand elongation involved in DNA replication 3.30.1490.30 47 3 63 2.98 4.67
1gccA00 72.90 Arabidopsis thalianaEthylene-responsive transcription factor 1AResponse to chitinEREBP-like factor 3.30.730.10 63 6 47 2.38 5.00
1b69A00 70.18 Transposase from transposon Tn916Enterococcus faecalis 3.30.160.60 69 13 43 1.73 3.98
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Displaying entries 1 to 29 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1a1hA01
RPYACPVESCDRRFSQSGSLTRHIRIHTGQ
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1a1hA01
MERPYACPVESCDRRFSQSGSLTRHIRIHTGQ
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:01

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:01

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:05

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"