CATH Domain: 1a02J00 XML data for domain: 1a02J00

Molscript image for 1a02J00
1a02J00
PDB coordinates for domain 1a02J00

PDB 1a02, Chain J, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.20 Up-down Bundle
1.20.5 Single alpha-helices involved in coiled-coils or other helix-helix interfaces
1.20.5.170 Gene3D
1.20.5.170.5
1.20.5.170.5.1
1.20.5.170.5.1.1
1.20.5.170.5.1.1.2
1.20.5.170.5.1.1.2.1

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Segment boundaries for domain 1a02J00

Chopping figure for domain 1a02J00
DomainStart PDB ResidueStop PDB Residue
1a02J00 267 318

Structural Neighbourhood (83 entries)

There are 83 matching structural neighberhood comparisons for CATH ID 1.20.5.170.5.1.1.2.1 (SIMAX score < 5)

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Displaying entries 1 to 83 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1dh3A00 90.19 Positive regulation of multicellular organism growthLactationRegulation of cell sizeAxonogenesisMus musculus 1.20.5.170 55 34 98 1.28 1.30
3e7kA00 89.86 Rattus norvegicusCalcium channel activityCalcium ion transportIntegral to membraneProtein binding 1.20.5.1010 54 5 87 1.26 1.44
1ci6A00 89.79 Positive regulation of transcription from RNA polymerase II promoterCellular amino acid metabolic processNeurotrophin signaling pathwayActivating transcription factor 4Sequence-specific DNA binding transcription factor activity 1.20.5.170 56 14 96 2.02 2.09
1jcdB00 89.57 Peptidoglycan bindingMurein lipoproteinMajor outer membrane lipoprotein LppProtein bindingEscherichia coli K-12 1.20.5.190 52 7 87 1.52 1.74
2b9bA04 89.20 Simian virus 5 (strain W3)Fusion glycoprotein F0 1.20.5.1070 62 7 85 1.32 1.54
1jekA00 88.82 Visna/maedi virus EV1 KV1772Envelope glycoprotein gp160 1.20.5.440 40 12 71 0.55 0.77
1ezjA02 88.53 Sendai virus (strain Harris)Phosphoprotein 1.10.287.340 52 7 87 2.79 3.19
1gu4A00 88.34 Transcription from RNA polymerase II promoterAcute-phase responseHomo sapiensCCAAT/enhancer-binding protein betaImmune response 1.20.5.170 65 17 86 1.76 2.04
1gmjD00 88.18 Negative regulation of hydrolase activityProtein homodimerization activityATPase inhibitor activityBos taurusCalmodulin binding 1.20.5.500 56 8 85 1.99 2.32
3gwoA00 87.18 Human immunodeficiency virus type 1 lw12.3 isolateEnvelope glycoprotein gp160 1.10.287.210 53 13 91 2.62 2.88
1jocA01 87.03 Zinc ion bindingVesicle fusionMembrane fractionSynaptic vesicle to endosome fusionProtein homodimerization activity 1.20.5.390 60 8 80 1.52 1.90
1ci6B00 87.02 Mammary gland epithelial cell differentiationMammary gland epithelial cell proliferationCytoplasmProtein heterodimerization activitySequence-specific enhancer binding RNA polymerase II transcription factor activity 1.20.5.170 47 23 73 1.23 1.68
1l2pA00 86.88 Oxidative phosphorylationMetabolic pathwaysATP synthesis coupled proton transportAnchored to membraneF-type H+-transporting ATPase subunit b [EC:3.6.3.14] 1.20.5.620 61 7 72 0.94 1.30
1r8eA03 86.66 Multidrug-efflux transporter 1 regulatorBacillus subtilis 1.20.5.490 44 11 67 0.69 1.02
3ii6A02 86.26 DNA ligation involved in DNA repairProtein C-terminus bindingDNA-dependent protein kinase-DNA ligase 4 complexResponse to X-rayDouble-strand break repair via nonhomologous end joining 1.20.5.370 58 5 75 1.52 2.00
1favA00 86.05 NucleusPositive regulation of RNA polymerase II transcriptional preinitiation complex assemblyEnvelope glycoprotein gp160General control protein GCN4General control protein GCN4 1.10.287.210 78 10 69 0.77 1.11
3kpeA00 86.02 Fusion glycoprotein F0Human respiratory syncytial virus A2 1.20.5.300 47 10 67 1.15 1.69
2w83C00 85.86 Homo sapiensIntegral to membraneC-Jun-amino-terminal kinase-interacting protein 4SpermatogenesisPositive regulation of cell migration 1.20.5.1000 67 8 83 2.22 2.66
2e42A00 85.68 Transcription from RNA polymerase II promoterAcute-phase responseHomo sapiensCCAAT/enhancer-binding protein betaImmune response 1.20.5.170 65 30 86 3.10 3.60
1nknA00 85.17 NucleusPositive regulation of RNA polymerase II transcriptional preinitiation complex assemblyGeneral control protein GCN4General control protein GCN4Positive regulation of gene-specific transcription from RNA polymerase II promoter 1.20.5.340 74 17 75 1.42 1.88
1ybkA00 85.16 TetrabrachionStaphylothermus marinus 1.20.5.1060 52 3 69 1.73 2.48
2basA02 85.10 Bacillus subtilisUncharacterized EAL-domain containing protein ykuI 1.20.5.170 46 4 82 2.49 3.03
1ic2B00 85.05 Gallus gallusTropomyosin alpha-1 chain 1.20.5.340 77 8 72 1.44 1.98
1kilE00 84.64 Complexin-1Syntaxin-1 bindingRattus norvegicusDendriteSynaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex 1.20.5.580 41 7 66 0.85 1.29
1ik9B02 83.91 DNA ligation involved in DNA repairResponse to X-rayDNA-dependent protein kinase-DNA ligase 4 complexProtein C-terminus bindingDouble-strand break repair via nonhomologous end joining 1.20.5.370 83 10 62 0.77 1.23
1no4C00 83.60 Bacillus phage phi29Head morphogenesis protein 1.20.5.400 73 14 75 2.11 2.80
1uixA00 83.28 Chemokine signaling pathwayRho-associated, coiled-coil containing protein kinase [EC:2.7.11.1]Leukocyte transendothelial migrationWnt signaling pathwayTGF-beta signaling pathway 1.20.5.730 68 16 80 3.01 3.72
2dw3A01 83.21 Intrinsic membrane protein pufXRhodobacter sphaeroides 2.4.1 1.20.5.920 55 5 94 4.39 4.64
1pl5A00 83.18 Chromatin silencing complexLoss of chromatin silencing involved in replicative cell agingChromatin silencingDouble-strand break repair via nonhomologous end joiningDouble-stranded DNA binding 1.20.5.730 75 10 73 2.48 3.38
1ifpA00 83.08 Pseudomonas phage Pf3Capsid protein G8P 1.20.5.440 44 4 73 1.90 2.60
1a2xB00 82.89 Troponin I, fast skeletal muscleTroponin T bindingOryctolagus cuniculus 1.20.5.420 31 12 55 0.67 1.21
2zxeB01 82.75 1.20.5.170 35 8 62 2.20 3.52
1pfiA00 82.38 Pseudomonas phage Pf1Capsid protein G8P 1.20.5.230 46 8 80 2.69 3.35
3effK02 82.30 Streptomyces lividansVoltage-gated potassium channel 1.20.5.440 45 11 69 2.18 3.13
2ifoA00 82.29 Xanthomonas phage XfCapsid protein G8P 1.20.5.230 46 2 80 3.21 3.99
1junA00 82.24 Pathways in cancerChagas diseaseNeurotrophin signaling pathwayB cell receptor signaling pathwayT cell receptor signaling pathway 1.20.5.170 43 79 66 1.59 2.41
1kv4A00 81.65 Moricin-1Bombyx mori 1.20.5.750 42 4 75 2.63 3.51
1hf9A00 81.53 Protein homodimerization activityNegative regulation of hydrolase activityATPase inhibitor activityBos taurusATPase binding 1.20.5.500 41 4 64 1.51 2.35
1xmeB01 81.49 Cytochrome c oxidase subunit 2Thermus thermophilus 1.20.1070.10 44 13 57 1.00 1.75
2p7jB01 81.45 Vibrio parahaemolyticusPutative sensory box/GGDEF family protein 1.20.5.170 39 15 53 1.35 2.52
1u57A00 81.18 Human immunodeficiency virus type 1 lw12.3 isolateGag polyprotein 1.20.5.760 48 8 75 2.14 2.85
1wt6B00 81.09 ATP bindingProtein phosphorylationRegulation of heart contractionHomo sapiensProtein serine/threonine kinase activity 1.20.5.340 67 12 68 2.63 3.83
1n2dC00 80.98 Mating projection tipGolgi inheritanceActin filament bindingVesicle-mediated transportMyosin-2 1.20.5.190 48 4 58 1.15 1.95
1piqA00 80.49 NucleusPositive regulation of RNA polymerase II transcriptional preinitiation complex assemblyGeneral control protein GCN4General control protein GCN4Specific RNA polymerase II transcription factor activity 1.20.5.170 31 19 55 1.21 2.19
1tiiC00 80.44 Heat-labile enterotoxin IIB, A chainEscherichia coli 1.20.5.200 36 11 53 1.63 3.04
2o1kA00 80.16 Simian rotavirus A/SA11-bothNon-structural glycoprotein 4 1.20.5.430 42 7 62 1.72 2.75
2qjyC01 79.64 Oxidative phosphorylationMetabolic pathwaysRhodobacter sphaeroidesUbiquinol-cytochrome c reductase iron-sulfur subunitUbiquinol-cytochrome c reductase iron-sulfur subunit [EC:1.10.2.2] 1.20.5.510 33 9 57 1.27 2.22
1xrdA01 79.31 Light-harvesting complex 1 alpha chainRhodospirillum rubrumLight-harvesting protein B-870 alpha chain 1.20.5.890 43 2 67 3.07 4.52
2zvoB00 79.11 Mus musculusNF-kappa-B essential modulatorActivation of NF-kappaB-inducing kinase activityB cell homeostasis 1.20.5.990 88 8 63 1.71 2.69
2v4hB00 79.02 Mus musculusNF-kappa-B essential modulatorActivation of NF-kappaB-inducing kinase activityB cell homeostasis 1.20.5.990 91 14 56 1.69 3.02
1go9A00 78.84 1.20.5.480 39 15 69 3.04 4.37
3efgA00 78.83 Xanthomonas campestris pv. campestrisSlyX proteinProtein slyX homolog 1.20.5.300 49 14 66 3.04 4.60
3b8eB00 78.42 Sodium/potassium-transporting ATPase subunit beta-1Sus scrofa 1.20.5.170 46 4 60 1.66 2.73
1s3jB01 78.26 Bacillus subtilisUncharacterized HTH-type transcriptional regulator yusO 1.20.5.420 30 10 53 1.81 3.38
1fdoA05 78.26 Methane metabolismMetabolic pathwaysGlyoxylate and dicarboxylate metabolismFormate dehydrogenase HFormate dehydrogenase, alpha subunit [EC:1.2.1.2] 1.20.5.460 27 7 48 1.36 2.82
2dw4A03 78.11 Lysine-specific histone demethylase 1AHistone demethylase activityNucleusTranscription repressor activityHomo sapiens 1.10.287.80 101 10 51 1.76 3.42
2hr3A01 77.75 Probable transcriptional regulatorPseudomonas aeruginosa 1.20.5.420 30 10 51 1.78 3.44
1owaA01 77.74 Structural constituent of cytoskeletonSpectrinHomo sapiensSpectrin-associated cytoskeletonActin filament organization 1.20.5.170 32 6 53 1.80 3.36
2wpqA00 77.53 Salmonella enterica subsp. enterica serovar TyphimuriumPutative inner membrane protein 1.20.5.980 99 12 56 2.42 4.28
2r44A01 77.35 Cytophaga hutchinsonii ATCC 33406MoxR-like ATPase [EC:3.6.3.-]Putative uncharacterized protein 1.20.5.420 26 11 46 0.79 1.70
1nwqA00 76.82 Protein domain specific bindingRattus norvegicusAcute-phase responsePathways in cancerOrgan regeneration 1.20.5.170 60 0 46 1.32 2.83
1d7mA00 76.43 Cortexillin-1Response to bacteriumProtein homodimerization activityActin filament bundle assemblyActin filament network formation 1.20.5.1050 101 5 49 1.85 3.74
1jmmA01 76.03 Major cell-surface adhesin PAcStreptococcus mutans 1.20.5.250 32 6 48 1.86 3.86
1s5lX00 75.77 Photosystem II reaction center X proteinThermosynechococcus elongatus BP-1 1.20.5.510 40 20 50 2.21 4.42
1aa0A00 75.53 Enterobacteria phage T4Fibritin 1.20.5.320 113 5 49 1.78 3.59
1gk4C00 75.20 Cellular component movementProtein C-terminus bindingIntermediate filamentVimentinCytosol 1.20.5.170 70 7 42 2.07 4.83
2gr7A00 73.92 Haemophilus influenzaeAdhesin 3.30.1300.30 101 7 40 1.40 3.45
1bmfG00 73.75 Bos taurusATP synthase subunit gamma, mitochondrialProtein binding 1.10.287.80 122 5 45 1.70 3.70
1mqsB00 73.49 Vesicle fusionSyntaxin 5SNAP receptor activityER to Golgi vesicle-mediated transportRetrograde vesicle-mediated transport, Golgi to ER 1.20.5.460 26 11 46 1.73 3.73
2oarE02 73.43 Large conductance mechanosensitive channel, MscL familyLarge-conductance mechanosensitive channelMycobacterium tuberculosis H37Ra 1.20.5.220 22 13 39 1.33 3.39
1h8bB00 73.40 TitinOryctolagus cuniculus 1.20.5.510 23 13 41 1.94 4.72
1vf5C03 73.09 Mastigocladus laminosusApocytochrome f 1.20.5.700 32 6 35 0.64 1.79
2p10B02 72.63 Mesorhizobium lotiMll9387 protein 1.20.5.460 26 11 42 1.92 4.48
1be3K00 72.41 Cardiac muscle contractionCytochrome b-c1 complex subunit 10Oxidative phosphorylationParkinson's diseaseAlzheimer's disease 1.20.5.220 22 0 39 1.07 2.72
1vl2B03 71.87 Thermotoga maritimaArginine and proline metabolismArgininosuccinate synthase [EC:6.3.4.5]Alanine, aspartate and glutamate metabolismArgininosuccinate synthase 1.20.5.470 30 6 51 2.45 4.73
1omiA02 71.55 Listeria monocytogenesListeriolysin regulatory protein 1.20.5.460 27 3 37 1.02 2.72
3c8vA04 70.15 Desulfovibrio desulfuricans subsp. desulfuricans str. G20Putative uncharacterized protein 1.20.5.510 19 10 33 0.81 2.39
2oarA02 68.56 Large conductance mechanosensitive channel, MscL familyLarge-conductance mechanosensitive channelMycobacterium tuberculosis H37Ra 1.20.5.220 17 17 30 0.48 1.58
2b5uA02 67.90 Colicin-E3Escherichia coli 1.10.287.620 161 10 32 1.46 4.52
2qiwA02 65.27 Corynebacterium glutamicumPEP phosphonomutase and related enzymes 1.20.5.510 18 22 32 1.02 3.17
1mslA02 64.83 1.20.5.220 18 11 32 1.44 4.48
1d66B02 64.68 Regulatory protein GAL4NucleusSequence-specific DNA binding transcription factor activityTranscription activator activityPositive regulation of transcription by galactose 1.20.5.640 15 13 26 0.55 2.05
1mkmA02 61.41 Thermotoga maritimaTranscriptional regulator, IclR family 1.20.5.640 14 14 25 0.61 2.44
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Displaying entries 1 to 83 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1a02J00
RKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQL
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1a02J00
MKAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQL
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:17

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:17

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:39

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"