CATH Domain: 1a02F00 XML data for domain: 1a02F00

Molscript image for 1a02F00
1a02F00
PDB coordinates for domain 1a02F00

PDB 1a02, Chain F, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.20 Up-down Bundle
1.20.5 Single alpha-helices involved in coiled-coils or other helix-helix interfaces
1.20.5.170 Gene3D
1.20.5.170.10
1.20.5.170.10.1
1.20.5.170.10.1.1
1.20.5.170.10.1.1.1
1.20.5.170.10.1.1.1.1

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Segment boundaries for domain 1a02F00

Chopping figure for domain 1a02F00
DomainStart PDB ResidueStop PDB Residue
1a02F00 140 192

Structural Neighbourhood (81 entries)

There are 81 matching structural neighberhood comparisons for CATH ID 1.20.5.170.10.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 81 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1ci6A00 91.33 Positive regulation of transcription from RNA polymerase II promoterCellular amino acid metabolic processNeurotrophin signaling pathwayActivating transcription factor 4Sequence-specific DNA binding transcription factor activity 1.20.5.170 56 30 85 0.68 0.79
1jcdB00 88.60 Peptidoglycan bindingMurein lipoproteinMajor outer membrane lipoprotein LppProtein bindingEscherichia coli K-12 1.20.5.190 52 5 96 2.04 2.12
1l2pA00 88.42 Oxidative phosphorylationMetabolic pathwaysATP synthesis coupled proton transportAnchored to membraneF-type H+-transporting ATPase subunit b [EC:3.6.3.14] 1.20.5.620 61 13 73 0.64 0.87
1e5wA04 87.88 Leukocyte migrationReceptor bindingCytoskeletonMembrane to membrane dockingNucleolus 1.20.5.450 55 7 90 1.81 1.99
1nwqA00 87.65 Protein domain specific bindingRattus norvegicusAcute-phase responsePathways in cancerOrgan regeneration 1.20.5.170 60 5 88 1.70 1.92
2b9bA04 87.58 Simian virus 5 (strain W3)Fusion glycoprotein F0 1.20.5.1070 62 5 85 2.02 2.36
1ik7A00 87.43 Regulation of proteolysisProtein domain specific bindingHemocyte proliferationPlasma membraneZygotic specification of dorsal/ventral axis 1.20.5.530 52 9 83 1.60 1.93
1jekA00 87.36 Visna/maedi virus EV1 KV1772Envelope glycoprotein gp160 1.20.5.440 40 12 75 1.03 1.36
1ezjA02 86.87 Sendai virus (strain Harris)Phosphoprotein 1.10.287.340 52 9 86 2.29 2.64
1dh3A00 86.43 Positive regulation of multicellular organism growthLactationRegulation of cell sizeAxonogenesisMus musculus 1.20.5.170 55 26 96 2.81 2.92
3e7kA00 86.18 Rattus norvegicusCalcium channel activityCalcium ion transportIntegral to membraneProtein binding 1.20.5.1010 54 7 83 2.41 2.89
1junA00 86.18 Pathways in cancerChagas diseaseNeurotrophin signaling pathwayB cell receptor signaling pathwayT cell receptor signaling pathway 1.20.5.170 43 11 81 1.91 2.35
2p7jB01 86.15 Vibrio parahaemolyticusPutative sensory box/GGDEF family protein 1.20.5.170 39 15 73 1.51 2.05
1ybkA00 86.04 TetrabrachionStaphylothermus marinus 1.20.5.1060 52 11 90 2.92 3.22
1kilE00 85.21 Complexin-1Syntaxin-1 bindingRattus norvegicusDendriteSynaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex 1.20.5.580 41 9 64 0.70 1.09
1nknA00 84.58 NucleusPositive regulation of RNA polymerase II transcriptional preinitiation complex assemblyGeneral control protein GCN4General control protein GCN4Positive regulation of gene-specific transcription from RNA polymerase II promoter 1.20.5.340 74 11 71 1.45 2.02
1gmjD00 84.34 Negative regulation of hydrolase activityProtein homodimerization activityATPase inhibitor activityBos taurusCalmodulin binding 1.20.5.500 56 3 62 1.61 2.58
1pl5A00 84.32 Chromatin silencing complexLoss of chromatin silencing involved in replicative cell agingChromatin silencingDouble-strand break repair via nonhomologous end joiningDouble-stranded DNA binding 1.20.5.730 75 9 70 1.19 1.68
2ifoA00 84.10 Xanthomonas phage XfCapsid protein G8P 1.20.5.230 46 2 86 2.83 3.26
1gd2F00 83.94 NuA4 histone acetyltransferase complexFungal AP-1-like factorResponse to hydrogen peroxideResponse to methylglyoxalCellular response to oxidative stress 1.20.5.170 64 16 82 3.41 4.12
1wt6B00 83.70 ATP bindingProtein phosphorylationRegulation of heart contractionHomo sapiensProtein serine/threonine kinase activity 1.20.5.340 67 13 79 2.63 3.32
1ic2B00 83.66 Gallus gallusTropomyosin alpha-1 chain 1.20.5.340 77 1 68 1.49 2.16
1gk4C00 83.57 Cellular component movementProtein C-terminus bindingIntermediate filamentVimentinCytosol 1.20.5.170 70 15 75 1.94 2.56
1ci6B00 82.86 Mammary gland epithelial cell differentiationMammary gland epithelial cell proliferationCytoplasmProtein heterodimerization activitySequence-specific enhancer binding RNA polymerase II transcription factor activity 1.20.5.170 47 10 83 3.65 4.40
1avyA00 82.70 Enterobacteria phage T4Fibritin 1.20.5.320 68 9 76 3.59 4.69
1g2cB00 82.64 Human respiratory syncytial virus strain RSS-2Fusion glycoprotein F0 1.20.5.170 40 5 75 2.69 3.56
1ltsC00 82.53 Heat-labile enterotoxin A chainEscherichia coli 1.20.5.240 41 12 67 3.32 4.89
1a2xB00 82.40 Troponin I, fast skeletal muscleTroponin T bindingOryctolagus cuniculus 1.20.5.420 31 9 58 0.93 1.59
3efgA00 82.26 Xanthomonas campestris pv. campestrisSlyX proteinProtein slyX homolog 1.20.5.300 49 6 75 2.72 3.60
1xrdA01 82.16 Light-harvesting complex 1 alpha chainRhodospirillum rubrumLight-harvesting protein B-870 alpha chain 1.20.5.890 43 6 79 3.00 3.79
1favA00 81.42 NucleusPositive regulation of RNA polymerase II transcriptional preinitiation complex assemblyEnvelope glycoprotein gp160General control protein GCN4General control protein GCN4 1.10.287.210 78 9 67 2.69 3.96
1tiiC00 81.40 Heat-labile enterotoxin IIB, A chainEscherichia coli 1.20.5.200 36 8 60 1.41 2.34
1pfiA00 81.25 Pseudomonas phage Pf1Capsid protein G8P 1.20.5.230 46 6 81 3.42 4.22
1omiA02 81.05 Listeria monocytogenesListeriolysin regulatory protein 1.20.5.460 27 11 50 0.71 1.39
1qgkB00 80.95 DNA metabolic processG2 phase of mitotic cell cycleNuclear localization sequence bindingRegulation of DNA recombinationImportin subunit alpha-2 1.20.5.690 44 6 62 2.98 4.79
1no4C00 80.81 Bacillus phage phi29Head morphogenesis protein 1.20.5.400 73 7 65 2.29 3.48
1s3jB01 80.73 Bacillus subtilisUncharacterized HTH-type transcriptional regulator yusO 1.20.5.420 30 3 54 1.03 1.88
1m7lA00 80.63 Negative regulation of T cell proliferationProtein bindingInnate immune responseLung alveolus developmentEndocytic vesicle 1.20.5.360 40 12 73 3.33 4.53
1dipB01 79.96 Sus scrofaTSC22 domain family protein 3 1.20.5.490 45 6 54 1.12 2.05
1fjkA00 79.94 Calcium signaling pathwayDilated cardiomyopathySus scrofaCardiac phospholambanPhospholamban 1.20.5.290 52 3 58 1.29 2.21
1u57A00 79.73 Human immunodeficiency virus type 1 lw12.3 isolateGag polyprotein 1.20.5.760 48 6 69 3.16 4.53
1vf5C03 79.44 Mastigocladus laminosusApocytochrome f 1.20.5.700 32 12 60 1.55 2.57
2hr3A01 79.33 Probable transcriptional regulatorPseudomonas aeruginosa 1.20.5.420 30 26 56 1.78 3.14
2dw3A01 79.21 Intrinsic membrane protein pufXRhodobacter sphaeroides 2.4.1 1.20.5.920 55 5 61 2.55 4.12
2r9iA00 79.19 Putative phage capsid proteinCorynebacterium diphtheriae 1.10.287.80 69 5 55 1.85 3.36
2r44A01 79.16 Cytophaga hutchinsonii ATCC 33406MoxR-like ATPase [EC:3.6.3.-]Putative uncharacterized protein 1.20.5.420 26 19 49 0.69 1.41
1uixA00 79.10 Chemokine signaling pathwayRho-associated, coiled-coil containing protein kinase [EC:2.7.11.1]Leukocyte transendothelial migrationWnt signaling pathwayTGF-beta signaling pathway 1.20.5.730 68 9 61 2.43 3.93
3gwoA00 78.67 Human immunodeficiency virus type 1 lw12.3 isolateEnvelope glycoprotein gp160 1.10.287.210 53 1 52 1.15 2.18
2v4hB00 78.64 Mus musculusNF-kappa-B essential modulatorActivation of NF-kappaB-inducing kinase activityB cell homeostasis 1.20.5.990 91 3 57 2.07 3.62
2wpqA00 78.61 Salmonella enterica subsp. enterica serovar TyphimuriumPutative inner membrane protein 1.20.5.980 99 9 53 1.89 3.53
1jmmA01 78.54 Major cell-surface adhesin PAcStreptococcus mutans 1.20.5.250 32 9 60 1.99 3.30
1mg1A03 78.43 Bacterial chemotaxisABC transportersMaltose/maltodextrin transport system substrate-binding proteinEscherichia coli O157:H7Maltose-binding periplasmic protein 1.10.287.210 84 7 57 1.96 3.43
1n2dC00 77.70 Mating projection tipGolgi inheritanceActin filament bindingVesicle-mediated transportMyosin-2 1.20.5.190 48 6 43 0.55 1.27
1r8eA03 77.46 Multidrug-efflux transporter 1 regulatorBacillus subtilis 1.20.5.490 44 2 49 1.13 2.30
1jocA01 77.45 Zinc ion bindingVesicle fusionMembrane fractionSynaptic vesicle to endosome fusionProtein homodimerization activity 1.20.5.390 60 9 56 2.19 3.86
2zxeB01 77.04 1.20.5.170 35 5 47 0.93 1.97
1go9A00 76.91 1.20.5.480 39 15 54 1.70 3.11
1fdoA05 76.55 Methane metabolismMetabolic pathwaysGlyoxylate and dicarboxylate metabolismFormate dehydrogenase HFormate dehydrogenase, alpha subunit [EC:1.2.1.2] 1.20.5.460 27 7 50 1.58 3.10
2qjyC01 76.54 Oxidative phosphorylationMetabolic pathwaysRhodobacter sphaeroidesUbiquinol-cytochrome c reductase iron-sulfur subunitUbiquinol-cytochrome c reductase iron-sulfur subunit [EC:1.10.2.2] 1.20.5.510 33 6 52 2.07 3.92
1vl2B03 76.53 Thermotoga maritimaArginine and proline metabolismArgininosuccinate synthase [EC:6.3.4.5]Alanine, aspartate and glutamate metabolismArgininosuccinate synthase 1.20.5.470 30 6 56 2.54 4.49
1ow6A01 76.05 Focal adhesion kinase 1Focal adhesionCytoskeletonIntegrin-mediated signaling pathwayHomo sapiens 1.20.5.540 30 3 43 1.98 4.56
1svfC00 75.89 Simian virus 5 (strain W3)Fusion glycoprotein F0 1.20.5.300 62 3 43 0.99 2.27
1slqF02 75.57 Outer capsid protein VP4Rhesus rotavirus 1.20.5.170 32 12 43 0.83 1.91
1qbzA00 75.29 Simian immunodeficiency virusEnvelope glycoprotein 1.10.287.210 102 7 47 1.55 3.29
2p10B02 74.59 Mesorhizobium lotiMll9387 protein 1.20.5.460 26 11 49 1.84 3.75
1be3K00 74.38 Cardiac muscle contractionCytochrome b-c1 complex subunit 10Oxidative phosphorylationParkinson's diseaseAlzheimer's disease 1.20.5.220 22 13 41 1.16 2.79
2oarE02 73.89 Large conductance mechanosensitive channel, MscL familyLarge-conductance mechanosensitive channelMycobacterium tuberculosis H37Ra 1.20.5.220 22 13 41 1.39 3.35
3c8vA04 73.87 Desulfovibrio desulfuricans subsp. desulfuricans str. G20Putative uncharacterized protein 1.20.5.510 19 5 35 0.47 1.31
3clqB01 73.71 Enterococcus faecalisPutative uncharacterized protein 1.20.5.220 24 8 37 0.68 1.80
2basA02 73.19 Bacillus subtilisUncharacterized EAL-domain containing protein ykuI 1.20.5.170 46 6 41 1.49 3.59
1t6aA01 73.10 Geobacillus stearothermophilusRbstp2229 protein 1.20.5.850 43 2 35 1.02 2.85
1h8bB00 72.60 TitinOryctolagus cuniculus 1.20.5.510 23 13 41 1.86 4.48
2b5uA02 71.81 Colicin-E3Escherichia coli 1.10.287.620 161 13 32 0.88 2.67
2oarA02 71.20 Large conductance mechanosensitive channel, MscL familyLarge-conductance mechanosensitive channelMycobacterium tuberculosis H37Ra 1.20.5.220 17 5 32 0.38 1.18
3b4sA02 70.88 Vibrio parahaemolyticusLuxT 1.20.5.830 41 0 33 0.44 1.30
1ozhA03 70.55 Acetolactate synthase, catabolicKlebsiella pneumoniae 1.20.5.740 24 4 35 1.46 4.07
2qiwA02 68.16 Corynebacterium glutamicumPEP phosphonomutase and related enzymes 1.20.5.510 18 11 33 1.12 3.30
1d66B02 66.48 Regulatory protein GAL4NucleusSequence-specific DNA binding transcription factor activityTranscription activator activityPositive regulation of transcription by galactose 1.20.5.640 15 13 28 0.35 1.24
2qsiA02 66.15 Putative hydrogenase expression/formation protein hupGHydrogenase-1 operon protein HyaERhodopseudomonas palustris 1.20.5.510 27 3 32 1.45 4.52
1mkmA02 62.58 Thermotoga maritimaTranscriptional regulator, IclR family 1.20.5.640 14 7 26 0.65 2.46
1dkgA01 60.93 Protein grpEResponse to heatMolecular chaperone GrpEEscherichia coli K-12 3.90.20.20 98 1 20 0.48 2.35
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Displaying entries 1 to 81 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1a02F00
RRIRRERNKMAAAKSRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEK
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1a02F00
MKRRIRRERNKMAAAKSRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKL
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:17

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:17

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:39

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"