CATH Domain: 16pkA01 XML data for domain: 16pkA01

Molscript image for 16pkA01
16pkA01
PDB coordinates for domain 16pkA01

PDB 16pk, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.1260 Gene3D
3.40.50.1260.1
3.40.50.1260.1.2
3.40.50.1260.1.2.1
3.40.50.1260.1.2.1.1
3.40.50.1260.1.2.1.1.1

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Segment boundaries for domain 16pkA01

Chopping figure for domain 16pkA01
DomainStart PDB ResidueStop PDB Residue
16pkA01 5 192
16pkA02 199 406

Structural Neighbourhood (2 entries)

There are 2 matching structural neighberhood comparisons for CATH ID 3.40.50.1260.1.2.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 2 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1v6sA01 91.39 Thermus thermophilus HB8Phosphoglycerate kinasePhosphoglycerate kinase [EC:2.7.2.3]Glycolysis / GluconeogenesisMetabolic pathways 3.40.50.1260 177 40 92 1.43 1.54
1fw8A01 79.91 Phosphoglycerate kinaseGlycolysisPhosphoglycerate kinase activityGluconeogenesisMetabolic pathways 3.40.50.1260 225 42 47 1.06 2.25
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Displaying entries 1 to 2 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|16pkA01
EKKSINECDLKGKKVLIRVDFNVPVKNGKITNDYRIRSALPTLKKVLTEGGSCVLMSHLGRPKGIPMAQAGKIRSTGGVP
GFQQKATLKPVAKRLSELLLRPVTFAPDCLNAADVVSKMSPGDVVLLENVRFYKEEGSKKAKDREAMAKILASYGDVYIS
DAFGTAHRDSATMTGIPKILGNGAAGYL
BLAST against CATH

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Domain COMBS Sequence 

>pdb|16pkA01
EKKSINECDLKGKKVLIRVDFNVPVKNGKITNDYRIRSALPTLKKVLTEGGSCVLMSHLGRPKGIPMAQAGKIRSTGGVP
GFQQKATLKPVAKRLSELLLRPVTFAPDCLNAADVVSKMSPGDVVLLENVRFYKEEGSKKAKDREAMAKILASYGDVYIS
DAFGTAHRDSATMTGIPKILGNGAAGYL
BLAST against CATH

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Domain History Events (4)

Update comment by auto on 16 Oct 2007 19:44

Around September/October 2007, this domain was renamed from "16pk001" to "16pkA01" as part of the work to deal with the remediation of the PDB (see http://remediation.wwpdb.org). Please see ticket:207 or wiki:Remediation on the CATH Trac system for more details.

Set cath from cathlist by auto on 05 Mar 2006 19:19

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:19

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:05

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"