Flow stage update by cuff on 17 May 2010 15:25
nice chopping
PDB Chain: 2h8pD
2h8pD
PDB 2h8p, Chain D
CATH Domains (1)
| Domain ID | CATH code | Image |
|---|---|---|
| 2h8pD00 | 1.20.5.110 |
Chain History Events (40)
Chain chopped by cuff on 17 May 2010 15:25
nice chopping
Domchop review by rupa on 09 Aug 2007 16:22
wcd
Flow stage update by rupa on 09 Aug 2007 16:22
wcd
Chain chopping manual by rupa on 09 Aug 2007 16:22
wcd
Domchop allotment by rupa on 09 Aug 2007 16:21
User 'rupa' has allocated a chain to themselves for DomChopping with comment : Grabbed this chain via DomChop's "Get Me A Chain" button.
Flow stage update by rupa on 09 Aug 2007 16:21
User 'rupa' has allocated a chain to themselves for DomChopping with comment : Grabbed this chain via DomChop's "Get Me A Chain" button.
Flow stage update by lewis on 06 Aug 2007 11:15
The HMM(SAM) scan for 2h8pD returned no results and this doesn't appear to be an error so I am shifting 2h8pD on to DOMCHOP_READY
Update comment by auto on 06 Aug 2007 08:24
HMM(SAM) job SID7292937424122020 for entry "2h8pD" returned no results. In an ideal world, all HMM(SAM) scans would return results. This isn't an ideal world and we're all going to have to deal with that. You need to decide why this HMM(SAM) scan has returned no results. Is it because there are no good HMM hits or is it because something has gone wrong? SG structures are more likely to have no decent HMM(SAM) hits than normal structures.
If something has gone wrong, please track down the problem and fix it.
If you are happy that there is no problem, then you may wish to run a command like the following one:
/usr/local/svn/source/update/v3.1.1/utilities/UpdateFlowStage.pl -d cathdb_current -h fletcher -u
Update comment by auto on 06 Aug 2007 01:34
HMM(SAM) job SID7292937424122020 is not yet finished.
Hmm submit by auto on 06 Aug 2007 00:04
The entry "2h8pD" has been submitted to the HMM (SAM) webservice.
Flow stage update by auto on 06 Aug 2007 00:04
The entry "2h8pD" has been submitted to the HMM (SAM) webservice.
Flow stage update by auto on 05 Aug 2007 23:03
Unable to retrieve "2h8pD" CATHEDRAL results for job "SID9532912309475280" but moving on as the structure doesn't contain sufficient secondary structure
Update comment by auto on 05 Aug 2007 17:25
"2h8pD" CATHEDRAL job SID9532912309475280 is not yet finished.
Cathedral submit by auto on 05 Aug 2007 15:32
The entry "2h8pD" has been submitted to the CATHEDRAL webservice.
Flow stage update by auto on 05 Aug 2007 15:32
The entry "2h8pD" has been submitted to the CATHEDRAL webservice.
Flow stage update by auto on 05 Aug 2007 11:16
ScanList with 9616 domains written to "/cath/data/current/scanlists/cathdb_current.fletcher/2h8pD.scanlist" for "2h8pD"
Update comment by auto on 05 Aug 2007 06:43
Waiting for 2895 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 05 Aug 2007 02:38
Waiting for 2937 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 04 Aug 2007 22:23
Waiting for 2979 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 04 Aug 2007 18:30
Waiting for 3049 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 04 Aug 2007 14:31
Waiting for 3117 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 04 Aug 2007 10:32
Waiting for 3173 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 04 Aug 2007 06:27
Waiting for 3227 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 04 Aug 2007 02:35
Waiting for 3254 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 03 Aug 2007 22:28
Waiting for 3261 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 03 Aug 2007 19:17
Waiting for 3262 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 03 Aug 2007 15:12
Waiting for 3306 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Flow stage update by auto on 03 Aug 2007 14:42
Added putative Choppings from the DBS that ran () for Chain "2h8pD"
Flow stage update by auto on 03 Aug 2007 14:19
Number of chains in ballcock flow stages is 773 which is less than the max allowed of 800
Update comment by auto on 28 Jul 2007 22:17
Number of chains in ballcock flow stages is 800 which hits the the max allowed of 800
Update comment by auto on 13 Jul 2007 16:21
Number of chains in ballcock flow stages is 400 which hits the the max allowed of 400
Flow stage update by auto on 13 Jul 2007 08:18
ChopClose result is not good enough for automatic chopping
Chain chopping chopclose by auto on 13 Jul 2007 08:18
Putative ChopClose added based on similarity with "2hwnB"
Flow stage update by auto on 12 Jul 2007 20:47
No in_process hits for Chain "2h8pD" ready to be processed
Flow stage update by auto on 12 Jul 2007 20:36
NW result present for Chain "2h8pD"
Flow stage update by auto on 12 Jul 2007 20:20
All required files are present for Chain "2h8pD"
Flow stage update by auto on 12 Jul 2007 20:03
Beginning processing for Chain "2h8pD"
Flow stage update by auto on 23 Feb 2007 17:33
Chain passed the SIFT criteria
Insertion by auto on 14 Sep 2006 15:28
Adding chain from chain pdb dir "/cath/data/current/chainpdb"
