CATH Domain: 1brcE01 XML data for domain: 1brcE01

Molscript image for 1brcE01
1brcE01
PDB coordinates for domain 1brcE01

PDB 1brc, Chain E, Domain 1

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.40 Beta Barrel
2.40.10 Thrombin, subunit H
2.40.10.10 Trypsin-like serine proteases Gene3D
2.40.10.10.4
2.40.10.10.4.1
2.40.10.10.4.1.5
2.40.10.10.4.1.5.9
2.40.10.10.4.1.5.9.3

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Segment boundaries for domain 1brcE01

Chopping figure for domain 1brcE01
DomainStart PDB ResidueStop PDB Residue
1brcE01 16 27
1brcE01 121 232
1brcE02 28 120
1brcE02 233 245

Structural Neighbourhood (26 entries)

There are 26 matching structural neighberhood comparisons for CATH ID 2.40.10.10.4.1.5.9.3 (SIMAX score < 5)

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Displaying entries 1 to 26 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1eaxA01 92.87 Integral to plasma membraneEukaryotic plasma membrane / membrane attachedPlasma membraneSuppressor of tumorigenicity protein 14Proteolysis 2.40.10.10 126 39 94 1.24 1.31
1gctA01 92.54 2.40.10.10 120 42 94 1.22 1.30
1bioA01 91.62 Complement factor D precursorComponent factor DComplement factor D activityHomo sapiensProteolysis 2.40.10.10 122 35 95 1.53 1.60
1eq9A01 91.05 2.40.10.10 117 33 96 1.45 1.50
2o8tA01 90.92 Urokinase plasminogen activatorHomo sapiens 2.40.10.10 128 45 93 1.56 1.66
2bvrH01 90.74 2.40.10.10 132 40 89 1.73 1.94
2jkhA01 89.92 Whole blood and lymphConnective tissueBlood coagulationExtracellular / secretion proteinsComplement and coagulation cascades 2.40.10.10 128 41 92 1.76 1.89
1a7sA01 89.42 Azurophil granulePositive regulation of tumor necrosis factor biosynthetic processPositive regulation of fractalkine biosynthetic processExtracellular / secretion proteinsPositive regulation of cell adhesion 2.40.10.10 112 30 91 1.87 2.04
1gvkB01 89.31 Sus scrofaElastase-1 precursorProtein binding 2.40.10.10 128 34 92 1.53 1.66
1elvA02 89.08 Whole blood and lymphComplement component 1, s subcomponentConnective tissueComplement and coagulation cascadesComplement C1s subcomponent precursor 2.40.10.10 126 35 89 2.21 2.46
2asuB01 88.97 Homo sapiensHepatocyte growth factor-like protein precursor 2.40.10.10 122 33 94 2.18 2.31
3dfjA01 88.69 Protein processing (proteolytic)Prostate glandProtease, serine, 8 (prostasin)Plasma membraneExtracellular region 2.40.10.10 135 40 87 1.71 1.96
2hlcA02 88.55 Hypoderma lineatumCollagenase precursor 2.40.10.10 126 30 90 1.78 1.97
1si5H01 88.18 2.40.10.10 119 30 93 2.19 2.35
1gvzA01 88.07 Equus caballusKallikrein-1E2 precursor 2.40.10.10 121 36 99 2.93 2.95
1nn6A01 85.56 2.40.10.10 114 28 92 2.81 3.04
1yphE00 85.01 2.40.10.10 97 39 65 1.32 2.01
2o8lA01 81.55 Glutamyl endopeptidaseGlutamyl endopeptidase precursorStaphylococcus aureus subsp. aureus Mu50 2.40.10.10 115 10 76 2.36 3.08
1y8tB02 81.12 Two-component system - GeneralProbable SERINE PROTEASE PEPDPutative serine protease PepDMycobacterium tuberculosis 2.40.10.10 111 15 74 3.06 4.13
2qf3B02 80.24 Protease degS precursorSerine protease DegSEscherichia coli K12Protein binding 2.40.10.10 103 15 75 3.02 4.03
1arbA01 79.72 Protease 1 precursorAchromobacter lyticus 2.40.10.10 122 9 87 3.90 4.45
1p3cA01 79.53 Glutamyl-endopeptidaseBacillus intermedius 2.40.10.10 102 16 80 3.27 4.09
1dleB02 78.39 Complement bindingHomo sapiensComplement factor B precursorComponent factor BComplement and coagulation cascades 2.40.10.10 142 18 67 2.41 3.56
2halA02 77.07 Human hepatitis A virus Hu/Northern Africa/MBB/1978Genome polyprotein 2.40.10.10 103 10 70 3.31 4.73
1mbmA02 74.92 Replicase polyprotein 1abEquine arteritis virus Bucyrus 2.40.10.10 72 11 55 2.12 3.85
1svpA02 72.27 Sindbis virusStructural polyprotein 2.40.10.10 86 11 57 2.44 4.24
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Displaying entries 1 to 26 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1brcE01
IVGGYTCQENSVVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASYPGKITDNMVCVGFLEGGK
GSCQGDSGGPVVCNGELQGIVSWGYGCALPDNPDVYTKVC
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1brcE01
IVGGYTCQENSVVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASYPGKITDNMVCVGFLEGGK
GSCQGDSGGPVVCNGELQGIVSWGYGCALPDNPDVYTKVC
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:26

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:26

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:13

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"