Flow stage update by cuff on 25 Sep 2007 10:45
nice chopping
| Domain ID | CATH code | Image |
|---|---|---|
| 1d66A00 | 4.10.240.10 |
nice chopping
nice chopping
i dont see any need for this chain to be chopped. Please assign as WCD and report 1d66B as a domain chopping problem on the wiki page.
i dont see any need for this chain to be chopped. Please assign as WCD and report 1d66B as a domain chopping problem on the wiki page.
Two domains- great SSAP and Rmsd scores as well as good superposition... But is this domain maybe just one domain with few secondary structures?
Two domains- great SSAP and Rmsd scores as well as good superposition... But is this domain maybe just one domain with few secondary structures?
Two domains- great SSAP and Rmsd scores as well as good superposition... But is this domain maybe just one domain with few secondary structures?
User 'tronnberg' has allocated a chain to themselves for DomChopping with comment : Grabbed this chain via DomChop's "Get Me A Chain" button.
User 'tronnberg' has allocated a chain to themselves for DomChopping with comment : Grabbed this chain via DomChop's "Get Me A Chain" button.
Retrieved HMM(SAM) results for job ID SID0197216514743840 and inserted them into the database.
Chain HMM chopping
HMM(SAM) job SID0197216514743840 is not yet finished.
The entry "1d66A" has been submitted to the HMM (SAM) webservice.
The entry "1d66A" has been submitted to the HMM (SAM) webservice.
Retrieved "1d66A" CATHEDRAL results for job ID SID3872431336165040 and inserted them into the database.
Chain "1d66A" CATHEDRAL chopping from job SID3872431336165040
The entry "1d66A" has been submitted to the CATHEDRAL webservice.
The entry "1d66A" has been submitted to the CATHEDRAL webservice.
ScanList with 9336 domains written to "/cath/data/current/scanlists/cathdb_current.fletcher/1d66A.scanlist" for "1d66A"
Waiting for 2347 new domains (example : 1ai6A01) to be processed so that they can be scanned against too.
Added putative Choppings from the DBS that ran () for Chain "1d66A"
Number of chains in ballcock flow stages is 114 which is less than the max allowed of 400
ChopClose result is not good enough for automatic chopping
Putative ChopClose added based on similarity with "1d66B"
No in_process hits for Chain "1d66A" ready to be processed
NW result present for Chain "1d66A"
All required files are present for Chain "1d66A"
Beginning processing for Chain "1d66A"
Chain passed the SIFT criteria
Adding chain from chain pdb dir "/cath/data/cathv3/chainpdb"